Stabilization of Protein Protein Interactions; transforming molecular glue discovery from art into science

Introduction

Intrinsically Disordered Proteins (IDPs) represent one of drug discovery’s major challenges. Due to their high degree of conformational freedom, IDPs have no defined pockets for binding small molecules.

Molecular Glues in Drug Discovery

Molecular glues that can strengthen protein-protein interactions (PPIs) are a revolutionary technology for drug discovery. The hub protein 14-3-3 regulates many IDPs via phosphorylation-dependent PPIs. Stabilization of 14-3-3 PPIs with small molecular glues provides a unique entry point to render IDPs druggable and mitigate the aberrant behavior of malfunctioning IDPs, for example in neurodegenerative diseases.

Current Challenges

While inhibition of PPIs by small molecules has expanded the proteome suitable for therapeutic intervention, the opposite chemical-biology strategy of PPI stabilization by small molecular glues is, despite a recent surge of interest, remarkably underexplored. The lack of mechanistic understanding of PPI stabilization impedes systematically identifying molecular glues and limits progress to drug IDPs.

Proposed Approach

Based on compelling preliminary data, I propose here that mechanistic understanding of 14-3-3 PPI stabilization will play a crucial role in the discovery of molecular glues for IDPs and transform molecular glue drug discovery from art into science.

Key Objectives

We will tackle this central question by pursuing two key objectives:

1. Mechanistically understand PPI stabilization between the 14-3-3 scaffold protein and IDPs. This will address the underlying thermodynamic and kinetic processes, conformational selection, multivalency, cooperativity, and selectivity.

2. Drugging the undruggable - biomolecular condensates and IDPs - via PPI stabilization approaches. The potential for PPI stabilization in the dense environments of biomolecular condensates will be uncovered, and a mechanism-driven campaign to identify molecular glues for the 14-3-3/Tau PPI will lead the way to novel drug discovery for neurodegenerative diseases.